Publikationslisten mit Pagination (orcid)

ZORA Publikationsliste

Publikationen

• Akram, I., Rohr, L., Shimizu, K. K., Shimizu Inatsugi, R., & Sato, Y. (2025). Spatial heterogeneity of disease infection attributable to neighbour genotypic identity in barley cultivars In Silico Plants, 8(1), diaf023. https://doi.org/10.1093/insilicoplants/diaf023
• Sun, J., Sese, J., & Shimizu, K. K. (2025). A likelihood ratio test for detecting shifts in homeolog expression ratios in allopolyploids New Phytologist, 249(1), 603–617. https://doi.org/10.1111/nph.70648
• White, B., Lux, T., Rusholme-Pilcher, R., Juhász, A., Kaithakottil, G., Duncan, S., Simmonds, J., Rees, H., Wright, J., Colmer, J., Ward, S., Joynson, R., Coombes, B., Irish, N., Henderson, S., Barker, T., Chapman, H., Catchpole, L., Gharbi, K., … et al. (2025). De novo annotation reveals transcriptomic complexity across the hexaploid wheat pan-genome Nature Communications, 16, 8538. https://doi.org/10.1038/s41467-025-64046-1
• Graff, A., Blasi, D. E., Ringen, E. J., Bajić, V., Bavelier, D., Shimizu, K. K., Pakendorf, B., Barbieri, C., & Bickel, B. (2025). Patterns of genetic admixture reveal similar rates of borrowing across diverse scenarios of language contact Science Advances, 11, eadv7521. https://doi.org/10.1126/sciadv.adv7521
• Kudoh, H., Sakane, M., Marhold, K., Shimizu Inatsugi, R., Shimizu, K. K., & Fukaki, H. (2025). Cartwheel aerenchyma in as a model of schizogenous tissue formation in plants IScience, 28, 113106. https://doi.org/10.1016/j.isci.2025.113106
• Huber, L. L., Arango Isaza Epifanía, Sandoval, J. R., Urban, M., Francalacci, P., Calò, C., Macholdt, E., Stoneking, M., Roewer, L., Seidel, M., Acosta, O., Fujita, R., Shimizu Kentaro K., & Barbieri, C. (2025). Human population history on the North Coast of peru from Y chromosomes and mitogenomes Scientific Reports, 15, 27362. https://doi.org/10.1038/s41598-025-08241-6
• Jung, Katharina; Akiyama, Reiko; Nie, Jilu; Nitta, Miyuki; Hamaya, Naoto-Benjamin; Qureshi, Naeela; Bhavani, Sridhar; Wicker, Thomas; Keller, Beat; Kishii, Masahiro; Nasuda, Shuhei; Shimizu, Kentaro K (2025). Unveiling yellow rust resistance in the near-Himalayan region: insights from a nested association mapping study TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 138(7):135.
• Jung, K. (2025). Exploring Asian Wheat Diversity: Nested Association Mapping for Abiotic and Biotic Stress Resilience in Bread Wheat (Dissertation, University of Zurich) https://doi.org/10.5167/uzh-278136
• Edger, Patrick P; Soltis, Douglas E; Yoshioka, Shunsuke; Vallejo‐Marin, Mario; Shimizu‐Inatsugi, Rie; Shimizu, Kentaro K; Salmon, Armel; Hiscock, Simon; Ainouche, Malika; Soltis, Pamela S (2025). Natural neopolyploids: a stimulus for novel research New Phytologist, 246(1):78-93.
• Nomura, Y., Okada, M., Tameshige, T., Takenaka, S., Shimizu, K. K., Nasuda, S., & Nagano, A. J. (2025). Subgenome-informed statistical modeling of transcriptomes in 25 common wheat accessions reveals $cis$- and $trans$-regulation architectures Plant & Cell Physiology, 66(3), 347–357. https://doi.org/10.1093/pcp/pcaf011
• Sato, Yasuhiro; Shimizu-Inatsugi, Rie; Takeda, Kazuya; Schmid, Bernhard; Nagano, Atsushi J; Shimizu, Kentaro K (2024). Reducing herbivory in mixed planting by genomic prediction of neighbor effects in the field Nature Communications, 15(1):8467.
• Jokinen, M. (2024). Drivers of Viral Community Assembly in a Wild Plant Host (Dissertation, University of Zurich) https://doi.org/10.5167/uzh-262055
• Arango Isaza, E. (2024). Interdisciplinary Perspectives on South American Prehistory: Integrating Population Genetics and Ethical Considerations Towards Indigenous Communities (Dissertation, University of Zurich) https://doi.org/10.5167/uzh-260420
• Li, Cheng . Linking Leaf Spectra to Genetic Variation 2024, University of Zurich, Faculty of Science.
• Stockenhuber, Reinhold; Akiyama, Reiko; Tissot, Nicolas; Milosavljevic, Stefan; Yamazaki, Misako; Wyler, Michele; Arongaus, Adriana B; Podolec, Roman; Sato, Yasuhiro; Widmer, Alex; Ulm, Roman; Shimizu, Kentaro K (2024). The UV RESISTANCE LOCUS 8-Mediated UV-B Response Is Required Alongside CRYPTOCHROME 1 For Plant Survival Under Sunlight In Field Conditions Plant & Cell Physiology, 65(1):35-48.
• Olivares, Ingrid; Tusso, Sergio; José Sanín, María; de La Harpe, Marylaure; Loiseau, Oriane; Rolland, Jonathan; Salamin, Nicolas; Kessler, Michael; Shimizu, Kentaro K; Paris, Margot (2024). Hyper-Cryptic radiation of a tropical montane plant lineage Molecular Phylogenetics and Evolution, 190:107954.
• Okada, Moeko; Shimizu, Kentaro K (2024). Wheat: Recent Advances in Genomics to Explore the History of Domestication and Polyploidization In: Osada, N; Kumagai, M; Suzuki, H; Endo, M . Phylogeographic History of Plants and Animals Coexisting with Humans in Asia. Singapore: Springer, 155-180.
• Giesen, Athene; Blanckenhorn, Wolf U; Schäfer, Martin A; Shimizu, Kentaro K; Shimizu-Inatsugi, Rie; Misof, Bernhard; Podsiadlowski, Lars; Niehuis, Oliver; Lischer, Heidi E L; Aeschbacher, Simon; Kapun, Martin (2023). Geographic Variation in Genomic Signals of Admixture Between Two Closely Related European Sepsid Fly Species Evolutionary Biology, 50(4):395-412.
• Yew, Chow-Lih; Tsuchimatsu, Takashi; Shimizu-Inatsugi, Rie; Yasuda, Shinsuke; Hatakeyama, Masaomi; Kakui, Hiroyuki; Ohta, Takuma; Suwabe, Keita; Watanabe, Masao; Takayama, Seiji; Shimizu, Kentaro K (2023). Dominance in self-compatibility between subgenomes of allopolyploid Arabidopsis kamchatica shown by transgenic restoration of self-incompatibility Nature Communications, 14(1):7618.
• Arango-Isaza, Epifanía; Aninao, María José; Campbell, Roberto; Martinez, Felipe I; Shimizu, Kentaro K; Barbieri, Chiara (2023). Bridging the gap: returning genetic results to indigenous communities in Latin America Frontiers in Genetics, 14:1304974.

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