Publikationslisten mit Pagination (orcid)

ZORA Publikationsliste

Publikationen

• Wittwer, S. (2022). Investigating the Structure, Connectivity and Colonization History of Australian Dolphin Populations (Tursiops sp. and Sousa sahulensis) Using Next-Generation Sequencing (Dissertation, University of Zurich) https://doi.org/10.5167/uzh-230058
• Sotiropoulos, A. G. (2022). Global population analyses of wheat powdery mildew using whole genome sequencing data (Dissertation, University of Zurich)
• Kofler, X. V. (2022). Pollinator-mediated mating system shifts in Brassica rapa (Dissertation, University of Zurich)
• Kakui, H., Yamazaki, M., & Shimizu, K. K. (2021). PRIMA: a rapid and cost-effective genotyping method to detect single-nucleotide differences using probe-induced heteroduplexes Scientific Reports, 11, 20741. https://doi.org/10.1038/s41598-021-99641-x
• Milosavljevic, S., Kuo, T., Decarli, S., Mohn, L., Sese, J., Shimizu, K. K., Shimizu-Inatsugi, R., & Robinson, M. D. (2021). ARPEGGIO: Automated Reproducible Polyploid EpiGenetic GuIdance workflOw BMC Genomics, 22, 547. https://doi.org/10.1186/s12864-021-07845-2
• Takimoto, H., Sato, Y., Nagano, A. J., Shimizu, K. K., & Kanagawa, A. (2021). Using a two-stage convolutional neural network to rapidly identify tiny herbivorous beetles in the field Ecological Informatics, 66, 101466. https://doi.org/10.1016/j.ecoinf.2021.101466
• Ng, K. K. S., Kobayashi, M. J., Fawcett, J. A., Hatakeyama, M., Paape, T., Ng, C. H., Ang, C. C., Tnah, L. H., Lee, C. T., Nishiyama, T., Sese, J., O’Brien, M. J., Copetti, D., Isa, M. N. M., Ong, R. C., Putra, M., Siregar, I. Z., Indrioko, S., Kosugi, Y., … Shimizu, K. K. (2021). The genome of Shorea leprosula (Dipterocarpaceae) highlights the ecological relevance of drought in aseasonal tropical rainforests Communications Biology, 4, 1166. https://doi.org/10.1038/s42003-021-02682-1
• Halstead-Nussloch, G., Tanaka, T., Copetti, D., Paape, T., Kobayashi, F., Hatakeyama, M., Kanamori, H., Wu, J., Mascher, M., Kawaura, K., Shimizu, K. K., & Handa, H. (2021). Multiple Wheat Genomes Reveal Novel Gli-2 Sublocus Location and Variation of Celiac Disease Epitopes in Duplicated α-Gliadin Genes Frontiers in Plant Science, 12, 715985. https://doi.org/10.3389/fpls.2021.715985
• Sato, T., Adachi, N., Kimura, R., Hosomichi, K., Yoneda, M., Oota, H., Tajima, A., Toyoda, A., Kanzawa-Kiriyama, H., Matsumae, H., Koganebuchi, K., Shimizu, K. K., Shinoda, K.-I., Hanihara, T., Weber, A., Kato, H., & Ishida, H. (2021). Whole Genome Sequencing of a 900-year-old Human Skeleton Supports Two Past Migration Events from the Russian Far East to Northern Japan Genome Biology and Evolution, 13, evab192. https://doi.org/10.1093/gbe/evab192
• Frei, D., Veekman, E., Grogg, D., Stoffel-Studer, I., Morishima, A., Shimizu-Inatsugi, R., Yates, S., Shimizu, K. K., Frey, J. E., Studer, B., & Copetti, D. (2021). Ultralong Oxford Nanopore reads enable the development of a reference-grade perennial ryegrass genome assembly Genome Biology and Evolution, 13, evab159. https://doi.org/10.1093/gbe/evab159
• Matsumae, H., Ranacher, P., Savage, P. E., Blasi, D. E., Currie, T. E., Koganebuchi, K., Nishida, N., Sato, T., Tanabe, H., Tajima, A., Brown, S., Stoneking, M., Shimizu, K. K., Oota, H., & Bickel, B. (2021). Exploring correlations in genetic and cultural variation across language families in northeast Asia Science Advances, 7, eabd9223. https://doi.org/10.1126/sciadv.abd9223
• Toda, Y., Tameshige, T., Tomiyama, M., Kinoshita, T., & Shimizu, K. K. (2021). An Affordable Image-Analysis Platform to Accelerate Stomatal Phenotyping During Microscopic Observation Frontiers in Plant Science, 12, 715309. https://doi.org/10.3389/fpls.2021.715309
• Shimizu-Inatsugi, R., Milosavljevic, S., Shimizu, K. K., Schaepman‐Strub, G., Tanoi, K., & Sato, Y. (2021). Metal accumulation and its effect on leaf herbivory in an allopolyploid species Arabidopsis kamchatica inherited from a diploid hyperaccumulator A. halleri Plant Species Biology, 36, 208–217. https://doi.org/10.1111/1442-1984.12304
• Sato, Y., Yamamoto, E., Shimizu, K. K., & Nagano, A. J. (2021). Neighbor GWAS: incorporating neighbor genotypic identity into genome-wide association studies of field herbivory Heredity, 126, 597–614. https://doi.org/10.1038/s41437-020-00401-w
• Shimizu, K. K., Copetti, D., Okada, M., Wicker, T., Tameshige, T., Hatakeyama, M., Shimizu-Inatsugi, R., Aquino, C., & et al. (2021). De Novo Genome Assembly of the Japanese Wheat Cultivar Norin 61 Highlights Functional Variation in Flowering Time and Fusarium Resistance Genes in East Asian Genotypes Plant & Cell Physiology, 62, 8–27. https://doi.org/10.1093/pcp/pcaa152
• Akiyama, R., Sun, J., Hatakeyama, M., Lischer, H. E. L., Briskine, R. V., Hay, A., Gan, X., Tsiantis, M., Kudoh, H., Kanaoka, M. M., Sese, J., Shimizu, K. K., & Shimizu-Inatsugi, R. (2021). Fine‐scale empirical data on niche divergence and homeolog expression patterns in an allopolyploid and its diploid progenitor species New Phytologist, 229, 3587–3601. https://doi.org/10.1111/nph.17101
• Kakui, H., Tsuchimatsu, T., Yamazaki, M., & Shimizu, K. K. (2021). Gene controlling pollen number - method to identify quantitative gene using genome editing Baiosaiensu to indasutorī, 79, 32–33. https://www.jba.or.jp/library/bi/
• Müller, M. C. (2021). Genomic and genetic analysis of host and cultivar adaption in the cereal powdery mildew pathosystem (Dissertation, University of Zurich)
• Walkowiak, S., Gao, L., Monat, C., et al, Kolodziej, M. C., Copetti, D., Krattinger, S. G., Keller, B., Wicker, T., Halstead-Nussloch, G., Paape, T., Shimizu-Inatsugi, R., & Shimizu, K. K. (2020). Multiple wheat genomes reveal global variation in modern breeding Nature, 588, 277–283. https://doi.org/10.1038/s41586-020-2961-x
• Rellstab, C., Zoller, S., Sailer, C., Tedder, A., Gugerli, F., Shimizu, K. K., Holderegger, R., Widmer, A., & Fischer, M. C. (2020). Genomic signatures of convergent adaptation to Alpine environments in three Brassicaceae species Molecular Ecology, 29, 4350–4365. https://doi.org/10.1111/mec.15648

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