Publikationslisten mit Pagination (orcid)

ZORA Publikationsliste

Publikationen

• Rellstab, C., Fischer, M. C., Zoller, S., Graf, R., Tedder, A., Shimizu, K. K., Widmer, A., Holderegger, R., & Gugerli, F. (2017). Local adaptation (mostly) remains local: reassessing environmental associations of climate-related candidate SNPs in Arabidopsis halleri Heredity, 118, 193–201. https://doi.org/10.1038/hdy.2016.82
• Viganó, C. (2017). Malaria history: investigations of mediterranean and swiss archaeological human remains using ancient DNA techniques (Dissertation, University of Zurich)
• Atchison, G. W. (2017). Systematic studies in Lupinus l. (Dissertation, University of Zurich) https://doi.org/10.5167/uzh-153511
• Giesen, A. (2017). Evolution of reproductive barriers between the two hybridizing sister species Sepsis cynipsea and S. neocynipsea (Diptera: Sepsidae) (Dissertation, University of Zurich) https://doi.org/10.5167/uzh-147189
• Giesen, A. (2017). Evolution of reproductive barriers between the two hybridizing sister species Sepsis cynipsea and S. neocynipsea (Diptera: Sepsidae) (Dissertation, University of Zurich) https://doi.org/10.5167/uzh-152387
• Rezaee Vahdati, R. A. (2017). Genotype networks: convergent evolution, population size and adaptation (Dissertation, University of Zurich) https://doi.org/10.5167/uzh-152480
• Ang, C. C., O’Brien, M. J., Ng, K. K. S., Lee, P. C., Hector, A., Schmid, B., & Shimizu, K. K. (2017). Genetic diversity of two tropical tree species of the Dipterocarpaceae following logging and restoration in Borneo: high genetic diversity in plots with high species diversity Plant Ecology and Diversity, 9, 459–469. https://doi.org/10.1080/17550874.2016.1270363
• Hirao, A. S., Onda, Y., Shimizu-Inatsugi, R., Sese, J., Shimizu, K. K., & Kenta, T. (2017). Cost-Effective Discovery of Nucleotide Polymorphisms in Populations of an Allopolyploid Species Using Pool-Seq American Journal of Molecular Biology, 07, 1031–1046. https://doi.org/10.4236/ajmb.2017.74012
• Abiven, S., Altermatt, F., Backhaus, N., Deplazes-Zemp, A., Furrer, R., Korf, B., Niklaus, P. A., Schaepman-Strub, G., Shimizu, K. K., Zuppinger-Dingley, D., Petchey, O. L., & Schaepman, M. E. (2017). Integrative research efforts at the boundary of biodiversity and global change research Current Opinion in Environmental Sustainability, 29, 215–222. https://doi.org/10.1016/j.cosust.2018.04.016
• Ferrari, G. (2017). Detection of pathogens by metagenomic analysis in preserved historic and prehistoric soft tissues (Dissertation, University of Zurich)
• Briskine, R. V., & Shimizu, K. K. (2017). Positional bias in variant calls against draft reference assemblies BMC Genomics, 18, 263. https://doi.org/10.1186/s12864-017-3637-2
• Lischer, H. E. L., & Shimizu, K. K. (2017). Reference-guided de novo assembly approach improves genome reconstruction for related species BMC Bioinformatics, 18, 474. https://doi.org/10.1186/s12859-017-1911-6
• Izuno, A., Hatakeyama, M., Nishiyama, T., Tamaki, I., Shimizu-Inatsugi, R., Sasaki, R., Shimizu, K. K., & Isagi, Y. (2016). Genome sequencing of Metrosideros polymorpha (Myrtaceae), a dominant species in various habitats in the Hawaiian Islands with remarkable phenotypic variations Journal of Plant Research, 129, 727–736. https://doi.org/10.1007/s10265-016-0822-3
• Shimizu-Inatsugi, R., Terada, A., Hirose, K., Kudoh, H., Sese, J., & Shimizu, K. K. (2016). Plant adaptive radiation mediated by polyploid plasticity in transcriptomes Molecular Ecology, 1–35. https://doi.org/10.1111/mec.13738
• Kobayashi, M. J., Takeuchi, Y., Kenta, T., Kume, T., Diway, B., & Shimizu, K. K. (2016). Application of gene expression analyses to studies of general flowering In S. Shoko, R. A. S. Pungga, P. Meleng, & T. Itioka (Eds.), Proceedings of the symposium "Frontier in tropical forest research: progress in joint projects between the Forest Department Sarawak and the Japan Research Consortium for Tropical Forests in Sarawak (pp. 46–51). Kyoto University.
• Menardo, F., Praz, C. R., Wyder, S., Ben-David, R., Bourras, S., Matsumae, H., McNally, K. E., Parlange, F., Riba, A., Roffler, S., Schaefer, L. K., Shimizu, K. K., Valenti, L., Zbinden, H., Wicker, T., & Keller, B. (2016). Hybridization of powdery mildew strains gives rise to pathogens on novel agricultural crop species Nature Genetics, 48, 201–205. https://doi.org/10.1038/ng.3485
• Novikova, P. Y., Hohmann, N., Nizhynska, V., Tsuchimatsu, T., Ali, J., Muir, G., Guggisberg, A., Paape, T., Schmid, K., Fedorenko, O. M., Holm, S., Säll, T., Schlötterer, C., Marhold, K., Widmer, A., Sese, J., Shimizu, K. K., Weigel, D., Krämer, U., … Nordborg, M. (2016). Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism Nature Genetics, 48, 1077–1082. https://doi.org/10.1038/ng.3617
• Paape, T., Hatakeyama, M., Shimizu-Inatsugi, R., Cereghetti, T., Onda, Y., Kenta, T., Sese, J., & Shimizu, K. K. (2016). Conserved but attenuated parental gene expression in allopolyploids: constitutive zinc hyperaccumulation in the allotetraploidArabidopsis kamchatica Molecular Biology and Evolution, 1–44. https://doi.org/10.1093/molbev/msw141
• Gan, X., Hay, A., et al, Briskine, R., Shimizu, K. K., & Shimizu-Inatsugi, R. (2016). The Cardamine hirsuta genome offers insight into the evolution of morphological diversity Nature Plants, 2, 16167. https://doi.org/10.1038/NPLANTS.2016.167
• Shimizu, K. K., & Tsuchimatsu, T. (2015). Evolution of selfing: recurrent patterns in molecular adaptation Annual Review of Ecology, Evolution and Systematics, 46, 593–622. https://doi.org/10.1146/annurev-ecolsys-112414-054249

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